Complete genome sequence of the novel Antarctic Oceanisphaera sp. IT1-181 that carried five plasmids

Mar Genomics. 2024 Apr:74:101083. doi: 10.1016/j.margen.2024.101083. Epub 2024 Jan 9.

Abstract

Bacteria of the genus Oceanisphaera in the class Gammaproteobacteria are widely distributed in marine environments. Oceanisphaera sp. IT1-181 was isolated from intertidal sediment in the coastal region of the Chinese Great Wall Station on the Fildes Peninsula, King George Island, Antarctica. Here, we sequenced the complete genome of strain IT1-181, which contained a single chromosome of 3,572,184 bp (G + C content of 49.89 mol%) with five plasmids. A total of 3229 protein-coding genes, 88 tRNA genes, and 25 rRNA genes were obtained. Genome sequence analysis revealed that strain IT1-181 was not only a potentially novel species of the genus Oceanisphaera, but also harbored genes involved in biosynthesizing ectoine as well as poly-β-hydroxybutyric acid (PHB). In addition, genes of a complete type I-E CRISPR-Cas system were found in the bacterium. The results indicate the potential of strain Oceanisphaera sp. IT1-181 in biotechnology and are helpful for us understanding its ecological roles in the changing Antarctic intertidal zone environment.

Keywords: Antarctic; Complete genome; Ectoine; Intertidal sediment; Oceanisphaera.

MeSH terms

  • Aeromonadaceae* / genetics
  • Antarctic Regions
  • Bacteria / genetics
  • Bacterial Typing Techniques
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Phylogeny
  • Plasmids / genetics
  • RNA, Ribosomal, 16S
  • Seawater* / microbiology
  • Sequence Analysis, DNA

Substances

  • Fatty Acids
  • DNA, Bacterial
  • RNA, Ribosomal, 16S