Diversity, community structure, and abundance of nirS-type denitrifying bacteria on suspended particulate matter in coastal high-altitude aquaculture pond water

Sci Rep. 2024 Mar 7;14(1):5594. doi: 10.1038/s41598-024-56196-x.

Abstract

Denitrifying bacteria harboring the nitrate reductase S (nirS) gene convert active nitrogen into molecular nitrogen, and alleviate eutrophication in aquaculture water. Suspended particulate matter (SPM) is an important component of aquaculture water and a carrier for denitrification. SPM with different particle sizes were collected from a coastal high-altitude aquaculture pond in Maoming City, China. Diversity, community structure, abundance of nirS-type denitrifying bacteria on SPM and environmental influencing factors were studied using high-throughput sequencing, fluorescence quantitative PCR, and statistical analysis. Pseudomonas, Halomonas, and Wenzhouxiangella were the dominant genera of nirS-type denitrifying bacteria on SPM from the ponds. Network analysis revealed Pseudomonas and Halomonas as the key genera involved in the interaction of nirS-type denitrifying bacteria on SPM in the ponds. qPCR indicated a trend toward greater nirS gene abundance in progressively larger SPM. Dissolved oxygen, pH, temperature, and SPM particle size were the main environmental factors influencing changes in the nirS-type denitrifying bacterial community on SPM in coastal high-altitude aquaculture pond water. These findings increase our understanding of the microbiology of nitrogen cycle processes in aquaculture ecosystem, and will help optimize aquatic tailwater treatment strategies.

Keywords: NirS gene; Aquaculture ecosystem; Coastal high-altitude aquaculture pond; Denitrifying bacteria; Suspended particulate matter.

MeSH terms

  • Altitude
  • Aquaculture
  • Bacteria / genetics
  • Denitrification
  • Ecosystem*
  • Nitrate Reductase
  • Nitrogen
  • Particulate Matter
  • Ponds*
  • Water / chemistry

Substances

  • Nitrate Reductase
  • Particulate Matter
  • Nitrogen
  • Water