Crystal structure and solution scattering of Geobacillus stearothermophilus S9 peptidase reveal structural adaptations for carboxypeptidase activity

FEBS Lett. 2024 Mar;598(6):684-701. doi: 10.1002/1873-3468.14834. Epub 2024 Mar 1.

Abstract

Acylaminoacyl peptidases (AAPs) play a pivotal role in various pathological conditions and are recognized as potential therapeutic targets. AAPs exhibit a wide range of activities, such as acylated amino acid-dependent aminopeptidase, endopeptidase, and less studied carboxypeptidase activity. We have determined the crystal structure of an AAP from Geobacillus stearothermophilus (S9gs) at 2.0 Å resolution. Despite being annotated as an aminopeptidase in the NCBI database, our enzymatic characterization proved S9gs to be a carboxypeptidase. Solution-scattering studies showed that S9gs exists as a tetramer in solution, and crystal structure analysis revealed adaptations responsible for the carboxypeptidase activity of S9gs. The findings present a hypothesis for substrate selection, substrate entry, and product exit from the active site, enriching our understanding of this rare carboxypeptidase.

Keywords: N‐acylated; acylaminoacyl; carboxypeptidase; ninhydrin; prolyl oligopeptidase.

MeSH terms

  • Aminopeptidases
  • Endopeptidases
  • Geobacillus stearothermophilus* / metabolism
  • Peptide Hydrolases* / metabolism
  • Proteolysis

Substances

  • Peptide Hydrolases
  • Endopeptidases
  • Aminopeptidases