Single-cell RNA profiling reveals classification and characteristics of mononuclear phagocytes in colorectal cancer

PLoS Genet. 2024 Feb 26;20(2):e1011176. doi: 10.1371/journal.pgen.1011176. eCollection 2024 Feb.

Abstract

Colorectal cancer (CRC) is a major cause of cancer mortality and a serious health problem worldwide. Mononuclear phagocytes are the main immune cells in the tumor microenvironment of CRC with remarkable plasticity, and current studies show that macrophages are closely related to tumor progression, invasion and dissemination. To understand the immunological function of mononuclear phagocytes comprehensively and deeply, we use single-cell RNA sequencing and classify mononuclear phagocytes in CRC into 6 different subsets, and characterize the heterogeneity of each subset. We find that tissue inhibitor of metalloproteinases (TIMPs) involved in the differentiation of proinflammatory and anti-inflammatory mononuclear phagocytes. Trajectory of circulating monocytes differentiation into tumor-associated macrophages (TAMs) and the dynamic changes at levels of transcription factor (TF) regulons during differentiation were revealed. We also find that C5 subset, characterized by activation of lipid metabolism, is in the terminal state of differentiation, and that the abundance of C5 subset is negatively correlated with CRC patients' prognosis. Our findings advance the understanding of circulating monocytes' differentiation into macrophages, identify a new subset associated with CRC prognosis, and reveal a set of TF regulons regulating mononuclear phagocytes differentiation, which are expected to be potential therapeutic targets for reversing immunosuppressive tumor microenvironment.

MeSH terms

  • Cell Differentiation / genetics
  • Colorectal Neoplasms* / pathology
  • Humans
  • Macrophages / metabolism
  • Monocytes*
  • Phagocytes / metabolism
  • RNA / metabolism
  • Tumor Microenvironment / genetics

Substances

  • RNA

Grants and funding

This work was supported by by the National Natural Science Foundation of China (No. 81801578 to TJ, 81974382 to ZW, 82173315 to ZW and 82072743 to GW), the National Key R&D Program of China (No. 2022YFC2408100 to LW) and the Major Scientific and Technological Innovation Projects in Hubei Province (No. 2022BCA013 to ZW). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.