High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex

Genome Biol Evol. 2024 Mar 2;16(3):evae034. doi: 10.1093/gbe/evae034.

Abstract

The filamentous fungus Podospora anserina is a model organism used extensively in the study of molecular biology, senescence, prion biology, meiotic drive, mating-type chromosome evolution, and plant biomass degradation. It has recently been established that P. anserina is a member of a complex of 7 closely related species. In addition to P. anserina, high-quality genomic resources are available for 2 of these taxa. Here, we provide chromosome-level annotated assemblies of the 4 remaining species of the complex, as well as a comprehensive data set of annotated assemblies from a total of 28 Podospora genomes. We find that all 7 species have genomes of around 35 Mb arranged in 7 chromosomes that are mostly collinear and less than 2% divergent from each other at genic regions. We further attempt to resolve their phylogenetic relationships, finding significant levels of phylogenetic conflict as expected from a rapid and recent diversification.

Keywords: Podospora bellae-mahoneyi; Podospora pseudoanserina; Podospora pseudocomata; Podospora pseudopauciseta; Sordariales; chromosomal rearrangements; phylogenomics.

MeSH terms

  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Phylogeny
  • Podospora* / genetics
  • Reproduction

Substances

  • Fungal Proteins