PARG-deficient tumor cells have an increased dependence on EXO1/FEN1-mediated DNA repair

EMBO J. 2024 Mar;43(6):1015-1042. doi: 10.1038/s44318-024-00043-2. Epub 2024 Feb 15.

Abstract

Targeting poly(ADP-ribose) glycohydrolase (PARG) is currently explored as a therapeutic approach to treat various cancer types, but we have a poor understanding of the specific genetic vulnerabilities that would make cancer cells susceptible to such a tailored therapy. Moreover, the identification of such vulnerabilities is of interest for targeting BRCA2;p53-deficient tumors that have acquired resistance to poly(ADP-ribose) polymerase inhibitors (PARPi) through loss of PARG expression. Here, by performing whole-genome CRISPR/Cas9 drop-out screens, we identify various genes involved in DNA repair to be essential for the survival of PARG;BRCA2;p53-deficient cells. In particular, our findings reveal EXO1 and FEN1 as major synthetic lethal interactors of PARG loss. We provide evidence for compromised replication fork progression, DNA single-strand break repair, and Okazaki fragment processing in PARG;BRCA2;p53-deficient cells, alterations that exacerbate the effects of EXO1/FEN1 inhibition and become lethal in this context. Since this sensitivity is dependent on BRCA2 defects, we propose to target EXO1/FEN1 in PARPi-resistant tumors that have lost PARG activity. Moreover, EXO1/FEN1 targeting may be a useful strategy for enhancing the effect of PARG inhibitors in homologous recombination-deficient tumors.

Keywords: BRCA2; DNA Repair; EXO1; FEN1; PARG.

MeSH terms

  • DNA Damage
  • DNA Repair
  • DNA Repair Enzymes / genetics
  • Exodeoxyribonucleases / genetics
  • Flap Endonucleases / genetics
  • Flap Endonucleases / metabolism
  • Flap Endonucleases / therapeutic use
  • Glycoside Hydrolases / genetics
  • Glycoside Hydrolases / metabolism
  • Humans
  • Neoplasms* / drug therapy
  • Neoplasms* / genetics
  • Poly(ADP-ribose) Polymerase Inhibitors / pharmacology
  • Tumor Suppressor Protein p53* / genetics
  • Tumor Suppressor Protein p53* / metabolism

Substances

  • Tumor Suppressor Protein p53
  • Poly(ADP-ribose) Polymerase Inhibitors
  • Glycoside Hydrolases
  • FEN1 protein, human
  • Flap Endonucleases
  • EXO1 protein, human
  • Exodeoxyribonucleases
  • DNA Repair Enzymes