DNA-induced assembly of biocatalytic nanocompartments for sensitive and selective aptasensing of aflatoxin B1

Anal Chim Acta. 2024 Mar 22:1295:342328. doi: 10.1016/j.aca.2024.342328. Epub 2024 Feb 2.

Abstract

Enzyme cascade with high specificity and catalytic efficiency has significant applications for developing efficient bioanalysis methods. In this work, a sensitive and selective aptasensor was constructed based on the DNA-induced assembly of biocatalytic nanocompartments. Different from the conventional co-immobilization in one pot, the cascade enzymes of glucose oxidase (GOX) and horseradish peroxidase (HRP) were separately encapsulated in ZIF-90 nanoparticles. After conjugating complementary DNA or aptermer on enzyme@ZIF-90, DNA hybridization drove enzyme@ZIF-90 connected into clusters or linked on other DNA modified biocatalytic nanocompartment (such as invertase loaded Fe3O4@SiO2). Owing to the shortened distance between enzymes, the catalytic efficiency of connected clusters was significantly enhanced. However, the specifically interaction between the substrate molecule and aptermer sequence would lead to the disassembly of DNA duplexes, resulting in the gradual "switching-off" of cascade reactions. With aflatoxin B1 (AFB1) as the model substrate, the compartmentalized three-enzyme nanoreactors showed good analytical performance in the linear range from 0.01 ng mL-1 to 50 ng mL-1 with a low detection limit (3.3 pg mL-1). In addition, the proposed aptasensor was applied to detect AFB1 in corn oil and wheat powder samples with total recoveries ranging from 94 % to 109 %. As a result, this DNA-induced strategy for enzyme cascade nanoreactors opens new avenues for stimuli-responsive applications in biosensing.

Keywords: Aflatoxin B1; Aptasensor; DNA hybridization; Enzyme cascade; ZIF-90.

MeSH terms

  • Aflatoxin B1 / analysis
  • Aptamers, Nucleotide* / chemistry
  • Biosensing Techniques* / methods
  • DNA / chemistry
  • Limit of Detection
  • Metal Nanoparticles* / chemistry
  • Metal-Organic Frameworks*
  • Nanoparticles*
  • Silicon Dioxide / chemistry

Substances

  • ZIF-90
  • Aflatoxin B1
  • Silicon Dioxide
  • DNA
  • Aptamers, Nucleotide
  • Metal-Organic Frameworks