Sources of Variance in Human Tear Proteomic Samples: Statistical Evaluation, Quality Control, Normalization, and Biological Insight

Int J Mol Sci. 2024 Jan 26;25(3):1559. doi: 10.3390/ijms25031559.

Abstract

Human tear fluid contains numerous compounds, which are present in highly variable amounts owing to the dynamic and multipurpose functions of tears. A better understanding of the level and sources of variance is essential for determining the functions of the different tear components and the limitations of tear samples as a potential biomarker source. In this study, a quantitative proteomic method was used to analyze variations in the tear protein profiles of healthy volunteers. High day-to-day and inter-eye personal variances were observed in the tear volumes, protein content, and composition of the tear samples. Several normalization and outlier exclusion approaches were evaluated to decrease variances. Despite the intrapersonal variances, statistically significant differences and cluster analysis revealed that proteome profile and immunoglobulin composition of tear fluid present personal characteristics. Using correlation analysis, we could identify several correlating protein clusters, mainly related to the source of the proteins. Our study is the first attempt to achieve more insight into the biochemical background of human tears by statistical evaluation of the experimentally observed dynamic behavior of the tear proteome. As a pilot study for determination of personal protein profiles of the tear fluids of individual patients, it contributes to the application of this noninvasively collectible body fluid in personal medicine.

Keywords: correlation analysis; data independent analysis; human tears; mass spectrometry; normalization; outlier detection; quantitative analysis.

MeSH terms

  • Eye Proteins / metabolism
  • Humans
  • Pilot Projects
  • Proteome* / metabolism
  • Proteomics* / methods
  • Quality Control
  • Tears / metabolism

Substances

  • Proteome
  • Eye Proteins

Grants and funding

This research was funded by the EU and the Hungarian Government, grant number EFOP-3.6.1-16-2016-00008, and by the Albert Szent-Györgyi Medical School, University of Szeged, grant number SZTE ÁOK-KKA No 2018/Tóth-MolnárE.