Implementation and Validation of an OpenMM Plugin for the Deep Potential Representation of Potential Energy

Int J Mol Sci. 2024 Jan 24;25(3):1448. doi: 10.3390/ijms25031448.

Abstract

Machine learning potentials, particularly the deep potential (DP) model, have revolutionized molecular dynamics (MD) simulations, striking a balance between accuracy and computational efficiency. To facilitate the DP model's integration with the popular MD engine OpenMM, we have developed a versatile OpenMM plugin. This plugin supports a range of applications, from conventional MD simulations to alchemical free energy calculations and hybrid DP/MM simulations. Our extensive validation tests encompassed energy conservation in microcanonical ensemble simulations, fidelity in canonical ensemble generation, and the evaluation of the structural, transport, and thermodynamic properties of bulk water. The introduction of this plugin is expected to significantly expand the application scope of DP models within the MD simulation community, representing a major advancement in the field.

Keywords: OpenMM; deep potential; force field; machine learning potential; molecular dynamics.

MeSH terms

  • Molecular Dynamics Simulation*
  • Thermodynamics
  • Water* / chemistry

Substances

  • Water