Chemical shift assignments of the ACID domain of MED25, a subunit of the mediator complex in Arabidopsis thaliana

Biomol NMR Assign. 2024 Jun;18(1):27-31. doi: 10.1007/s12104-024-10164-8. Epub 2024 Feb 9.

Abstract

Mediator complex is a key component that bridges various transcription activators and RNA polymerase during eukaryotic transcription initiation. The Arabidopsis thaliana Med25 (aMed25), a subunit of the Mediator complex, plays important roles in regulating hormone signaling, biotic and abiotic stress responses and plant development by interacting with a variety of transcription factors through its activator-interacting domain (ACID). However, the recognition mechanism of aMed25-ACID for various transcription factors remains unknown. Here, we report the nearly complete 1H, 13C, and 15N backbone and side chain resonance assignments of aMED25-ACID (residues 551-681). TALOS-N analysis revealed that aMED25-ACID structure is comprised of three α-helices and seven β-strands, which lacks the C-terminal α-helix existing in the human MED25-ACID. This study lays a foundation for further research on the structure-function relationship of aMED25-ACID.

Keywords: Activator-interacting domain; Chemical shift assignment; Plant protein; Transcription activation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis Proteins* / chemistry
  • Arabidopsis Proteins* / metabolism
  • Arabidopsis* / chemistry
  • Arabidopsis* / metabolism
  • Mediator Complex* / chemistry
  • Mediator Complex* / metabolism
  • Nuclear Magnetic Resonance, Biomolecular*
  • Protein Domains*
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • Trans-Activators

Substances

  • Arabidopsis Proteins
  • Mediator Complex
  • SFR6 protein, Arabidopsis
  • Protein Subunits
  • Trans-Activators