Identifying the perceived local properties of networks reconstructed from biased random walks

PLoS One. 2024 Jan 19;19(1):e0296088. doi: 10.1371/journal.pone.0296088. eCollection 2024.

Abstract

Many real-world systems give rise to a time series of symbols. The elements in a sequence can be generated by agents walking over a networked space so that whenever a node is visited the corresponding symbol is generated. In many situations the underlying network is hidden, and one aims to recover its original structure and/or properties. For example, when analyzing texts, the underlying network structure generating a particular sequence of words is not available. In this paper, we analyze whether one can recover the underlying local properties of networks generating sequences of symbols for different combinations of random walks and network topologies. We found that the reconstruction performance is influenced by the bias of the agent dynamics. When the walker is biased toward high-degree neighbors, the best performance was obtained for most of the network models and properties. Surprisingly, this same effect is not observed for the clustering coefficient and eccentric, even when large sequences are considered. We also found that the true self-avoiding displayed similar performance as the one preferring highly-connected nodes, with the advantage of yielding competitive performance to recover the clustering coefficient. Our results may have implications for the construction and interpretation of networks generated from sequences.

MeSH terms

  • Algorithms*
  • Cluster Analysis
  • Computer Simulation
  • Time Factors
  • Walking*

Grants and funding

Diego R. Amancio acknowledges financial support from CNPq (grant no. 311074/2021-9) and São Paulo Research Foundation (FAPESP grant no. 2020/06271-0). This research was supported in part by Lilly Endowment, Inc., through its support for the Indiana University Pervasive Technology Institute. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.