The Mediator kinase module enhances polymerase activity to regulate transcriptional memory after heat stress in Arabidopsis

EMBO J. 2024 Feb;43(3):437-461. doi: 10.1038/s44318-023-00024-x. Epub 2024 Jan 16.

Abstract

Plants are often exposed to recurring adverse environmental conditions in the wild. Acclimation to high temperatures entails transcriptional responses, which prime plants to better withstand subsequent stress events. Heat stress (HS)-induced transcriptional memory results in more efficient re-induction of transcription upon recurrence of heat stress. Here, we identified CDK8 and MED12, two subunits of the kinase module of the transcription co-regulator complex, Mediator, as promoters of heat stress memory and associated histone modifications in Arabidopsis. CDK8 is recruited to heat-stress memory genes by HEAT SHOCK TRANSCRIPTION FACTOR A2 (HSFA2). Like HSFA2, CDK8 is largely dispensable for the initial gene induction upon HS, and its function in transcriptional memory is thus independent of primary gene activation. In addition to the promoter and transcriptional start region of target genes, CDK8 also binds their 3'-region, where it may promote elongation, termination, or rapid re-initiation of RNA polymerase II (Pol II) complexes during transcriptional memory bursts. Our work presents a complex role for the Mediator kinase module during transcriptional memory in multicellular eukaryotes, through interactions with transcription factors, chromatin modifications, and promotion of Pol II efficiency.

Keywords: CDK8; Heat Stress; Mediator Kinase Module; RNA Polymerase II; Transcriptional Memory.

MeSH terms

  • Arabidopsis Proteins* / genetics
  • Arabidopsis Proteins* / metabolism
  • Arabidopsis* / genetics
  • Arabidopsis* / metabolism
  • Cyclin-Dependent Kinase 8 / genetics
  • Cyclin-Dependent Kinase 8 / metabolism
  • Heat Shock Transcription Factors / metabolism
  • Heat-Shock Response / genetics
  • Mediator Complex / genetics
  • Nucleotidyltransferases / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Transcriptional Activation

Substances

  • Transcription Factors
  • Heat Shock Transcription Factors
  • Nucleotidyltransferases
  • Mediator Complex
  • CDK8 protein, Arabidopsis
  • Arabidopsis Proteins
  • Cyclin-Dependent Kinase 8