Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing

Nat Struct Mol Biol. 2024 Jan;31(1):82-91. doi: 10.1038/s41594-023-01143-z. Epub 2024 Jan 4.

Abstract

The NLR family caspase activation and recruitment domain-containing 4 (NLRC4) inflammasome is a critical cytosolic innate immune machine formed upon the direct sensing of bacterial infection and in response to cell stress during sterile chronic inflammation. Despite its major role in instigating the subsequent host immune response, a more complete understanding of the molecular events in the formation of the NLRC4 inflammasome in humans is lacking. Here we identify Bacillus thailandensis type III secretion system needle protein (Needle) as a potent trigger of the human NLR family apoptosis inhibitory protein (NAIP)/NLRC4 inflammasome complex formation and determine its structural features by cryogenic electron microscopy. We also provide a detailed understanding of how type III secretion system pathogen components are sensed by human NAIP to form a cascade of NLRC4 protomer through a critical lasso-like motif, a 'lock-key' activation model and large structural rearrangement, ultimately forming the full human NLRC4 inflammasome. These results shed light on key regulatory mechanisms specific to the NLRC4 inflammasome assembly, and the innate immune modalities of pathogen sensing in humans.

MeSH terms

  • CARD Signaling Adaptor Proteins
  • Calcium-Binding Proteins / metabolism
  • Flagellin / metabolism
  • Humans
  • Inflammasomes*
  • Macrophages / metabolism
  • Macrophages / microbiology
  • Neuronal Apoptosis-Inhibitory Protein / metabolism
  • Type III Secretion Systems*

Substances

  • Inflammasomes
  • Type III Secretion Systems
  • Flagellin
  • Calcium-Binding Proteins
  • NLRC4 protein, human
  • CARD Signaling Adaptor Proteins
  • NAIP protein, human
  • Neuronal Apoptosis-Inhibitory Protein