Rank aggregation of independent genetic screen results highlights new strategies for adoptive cellular transfer therapy of cancer

Front Immunol. 2023 Dec 8:14:1235131. doi: 10.3389/fimmu.2023.1235131. eCollection 2023.

Abstract

Efficient intratumoral infiltration of adoptively transferred cells is a significant barrier to effectively treating solid tumors with adoptive cellular transfer (ACT) therapies. Our recent forward genetic, whole-genome screen identified T cell-intrinsic gene candidates that may improve tumor infiltration of T cells. Here, results are combined with five independent genetic screens using rank aggregation to improve rigor. This resulted in a combined total of 1,523 candidate genes - including 1,464 genes not currently being evaluated as therapeutic targets - that may improve tumor infiltration of T cells. Gene set enrichment analysis of a published human dataset shows that these gene candidates are differentially expressed in tumor infiltrating compared to circulating T cells, supporting translational potential. Importantly, adoptive transfer of T cells overexpressing gain-of-function candidates (AAK1ΔN125, SPRR1B, and EHHADH) into tumor-bearing mice resulted in increased T cell infiltration into tumors. These novel gene candidates may be considered as potential therapeutic candidates that can aid adoptive cellular therapy in improving T cell infiltration into solid tumors.

Keywords: CAR-T; Sleeping Beauty; T cell trafficking; adoptive transfer therapy; cancer immunotherapy.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adoptive Transfer
  • Animals
  • Humans
  • Immunotherapy, Adoptive* / methods
  • Mice
  • Neoplasms* / genetics
  • Neoplasms* / pathology
  • Neoplasms* / therapy
  • T-Lymphocytes / pathology