Discovery of novel and potent dual-targeting AXL/HDAC2 inhibitors for colorectal cancer treatment via structure-based pharmacophore modelling, virtual screening, and molecular docking, molecular dynamics simulation studies, and biological evaluation

J Enzyme Inhib Med Chem. 2024 Dec;39(1):2295241. doi: 10.1080/14756366.2023.2295241. Epub 2023 Dec 22.

Abstract

Colorectal cancer (CRC) is one of the most common cancers worldwide. Nowadays, owing to the complex mechanism of tumorigenesis, simultaneous inhibition of multiple targets is an important anticancer strategy. Recent studies have demonstrated receptor tyrosine kinase AXL (AXL) and histone deacetylase 2 (HDAC2) are closely associated with colorectal cancer. Herein, we identified five hit compounds concurrently targeting AXL and HDAC2 using virtual screening. Inhibitory experiments revealed these hit compounds potently inhibited AXL and HDAC2 in the nanomolar range. Among them, Hit-3 showed the strongest inhibitory effects which were better than that of the positive control groups. Additionally, MD assays showed that Hit-3 could bind stably to the AXL and HDAC2 active pockets. Further MTT assays demonstrated that Hit-3 showed potent anti-proliferative activity. Most importantly, Hit-3 exhibited significant in vivo antitumor efficacy in xenograft models. Collectively, this study is the first discovery of dual-targeting AXL/HDAC2 inhibitors for colorectal cancer treatment.

Keywords: Colorectal cancer; dual-targeting AXL/HDAC2 inhibitor; histone deacetylase 2; receptor tyrosine kinase AXL; structure-based pharmacophore modelling.

MeSH terms

  • Colorectal Neoplasms* / drug therapy
  • Early Detection of Cancer
  • Histone Deacetylase 2 / metabolism
  • Histone Deacetylase Inhibitors / pharmacology
  • Humans
  • Molecular Docking Simulation
  • Molecular Dynamics Simulation*
  • Pharmacophore

Substances

  • Histone Deacetylase 2
  • Histone Deacetylase Inhibitors
  • HDAC2 protein, human

Grants and funding

This work was supported by Huai’an Science and Technology Bureau (HAB202210), and Jiangsu Pharmaceutical Association-CHIATAI TIANQING Hospital Pharmacy Research Fund Program (Q202239).