Photoacoustic Calorimetry Studies of O2-Sensing FixL and (R200, I209) Variants from Sinorhizobium meliloti Reveal Conformational Changes Coupled to Ligand Photodissociation from the Heme-PAS Domain

Biochemistry. 2024 Jan 2;63(1):116-127. doi: 10.1021/acs.biochem.3c00438. Epub 2023 Dec 21.

Abstract

FixL is an oxygen-sensing heme-PAS protein that regulates nitrogen fixation in the root nodules of plants. In this paper, we present the first photothermal studies of the full-length wild-type FixL protein from Sinorhizobium meliloti and the first thermodynamic profile of a full-length heme-PAS protein. Photoacoustic calorimetry studies reveal a quadriphasic relaxation for SmFixL*WT and the five variant proteins (SmFixL*R200H, SmFixL*R200Q, SmFixL*R200E, SmFixL*R200A, and SmFixL*I209M) with four intermediates from <20 ns to ∼1.5 μs associated with the photodissociation of CO from the heme. The altered thermodynamic profiles of the full-length SmFixL* variant proteins confirm that the conserved heme domain residues R200 and I209 are important for signal transduction. In contrast, the truncated heme domain, SmFixLH128-264, shows only a single, fast monophasic relaxation at <50 ns associated with the fast disruption of a salt bridge and release of CO to the solvent, suggesting that the full-length protein is necessary to observe the conformational changes that propagate the signal from the heme domain to the kinase domain.

MeSH terms

  • Bacterial Proteins / chemistry
  • Calorimetry
  • Heme / chemistry
  • Hemeproteins* / metabolism
  • Histidine Kinase / genetics
  • Histidine Kinase / metabolism
  • Ligands
  • Oxygen / metabolism
  • Protein Kinases / metabolism
  • Sinorhizobium meliloti* / chemistry

Substances

  • Protein Kinases
  • Histidine Kinase
  • Heme
  • Ligands
  • Hemeproteins
  • Oxygen
  • Bacterial Proteins