Transcriptomic analysis reveals impact of gE/gI/TK deletions on host response to PRV infection

Virol J. 2023 Dec 19;20(1):303. doi: 10.1186/s12985-023-02265-y.

Abstract

Background: Pseudorabies virus (PRV) causes substantial losses in the swine industry worldwide. Attenuated PRV strains with deletions of immunomodulatory genes glycoprotein E (gE), glycoprotein I (gI) and thymidine kinase (TK) are candidate vaccines. However, the effects of gE/gI/TK deletions on PRV-host interactions are not well understood.

Methods: To characterize the impact of gE/gI/TK deletions on host cells, we analyzed and compared the transcriptomes of PK15 cells infected with wild-type PRV (SD2017), PRV with gE/gI/TK deletions (SD2017gE/gI/TK) using RNA-sequencing.

Results: The attenuated SD2017gE/gI/TK strain showed increased expression of inflammatory cytokines and pathways related to immunity compared to wild-type PRV. Cell cycle regulation and metabolic pathways were also perturbed.

Conclusions: Deletion of immunomodulatory genes altered PRV interactions with host cells and immune responses. This study provides insights into PRV vaccine design.

Keywords: Gene deletions; Mutant; PK15 cells; Pseudorabies virus; Transcriptome; gE/gI/TK.

MeSH terms

  • Animals
  • Gene Expression Profiling
  • Glycoproteins / genetics
  • Herpesvirus 1, Suid* / genetics
  • Pseudorabies*
  • Swine
  • Swine Diseases*
  • Thymidine Kinase / genetics
  • Viral Envelope Proteins / genetics

Substances

  • Thymidine Kinase
  • Viral Envelope Proteins
  • Glycoproteins