Adaptive β-lactam resistance from an inducible efflux pump that is post-translationally regulated by the DjlA co-chaperone

PLoS Biol. 2023 Dec 5;21(12):e3002040. doi: 10.1371/journal.pbio.3002040. eCollection 2023 Dec.

Abstract

The acquisition of multidrug resistance (MDR) determinants jeopardizes treatment of bacterial infections with antibiotics. The tripartite efflux pump AcrAB-NodT confers adaptive MDR in the polarized α-proteobacterium Caulobacter crescentus via transcriptional induction by first-generation quinolone antibiotics. We discovered that overexpression of AcrAB-NodT by mutation or exogenous inducers confers resistance to cephalosporin and penicillin (β-lactam) antibiotics. Combining 2-step mutagenesis-sequencing (Mut-Seq) and cephalosporin-resistant point mutants, we dissected how TipR uses a common operator of the divergent tipR and acrAB-nodT promoter for adaptive and/or potentiated AcrAB-NodT-directed efflux. Chemical screening identified diverse compounds that interfere with DNA binding by TipR or induce its dependent proteolytic turnover. We found that long-term induction of AcrAB-NodT deforms the envelope and that homeostatic control by TipR includes co-induction of the DnaJ-like co-chaperone DjlA, boosting pump assembly and/or capacity in anticipation of envelope stress. Thus, the adaptive MDR regulatory circuitry reconciles drug efflux with co-chaperone function for trans-envelope assemblies and maintenance.

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Bacterial Proteins* / metabolism
  • Biological Transport
  • Cephalosporins
  • Escherichia coli Proteins* / metabolism
  • Microbial Sensitivity Tests
  • Molecular Chaperones / genetics
  • Molecular Chaperones / metabolism
  • beta-Lactam Resistance

Substances

  • Bacterial Proteins
  • Anti-Bacterial Agents
  • Cephalosporins
  • Molecular Chaperones
  • Escherichia coli Proteins

Grants and funding

Financial support was obtained from the Swiss National Science Foundation (Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung) grant number CRSII5_198737 to PHV. JC was supported by the Fondation Ernst et Lucie Schmidheiny. BC and MP received funding by the NOMIS foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.