An atlas of rational genetic engineering strategies for improved xylose metabolism in Saccharomyces cerevisiae

PeerJ. 2023 Nov 28:11:e16340. doi: 10.7717/peerj.16340. eCollection 2023.

Abstract

Xylose is the second most abundant carbohydrate in nature, mostly present in lignocellulosic material, and representing an appealing feedstock for molecule manufacturing through biotechnological routes. However, Saccharomyces cerevisiae-a microbial cell widely used industrially for ethanol production-is unable to assimilate this sugar. Hence, in a world with raising environmental awareness, the efficient fermentation of pentoses is a crucial bottleneck to producing biofuels from renewable biomass resources. In this context, advances in the genetic mapping of S. cerevisiae have contributed to noteworthy progress in the understanding of xylose metabolism in yeast, as well as the identification of gene targets that enable the development of tailored strains for cellulosic ethanol production. Accordingly, this review focuses on the main strategies employed to understand the network of genes that are directly or indirectly related to this phenotype, and their respective contributions to xylose consumption in S. cerevisiae, especially for ethanol production. Altogether, the information in this work summarizes the most recent and relevant results from scientific investigations that endowed S. cerevisiae with an outstanding capability for commercial ethanol production from xylose.

Keywords: Bioenergy; Bioethanol; CRISPR-Cas9; Cellulosic ethanol; Gene editing; Metabolic engineering; PPP; Saccharomyces cerevisiae; Xylose; Yeast.

Publication types

  • Review

MeSH terms

  • Ethanol / metabolism
  • Fermentation
  • Metabolic Engineering / methods
  • Saccharomyces cerevisiae* / genetics
  • Xylose* / genetics

Substances

  • Xylose
  • Ethanol

Grants and funding

This study was financed by the National Agency of Petroleum, Natural Gas and Biofuels (ANP), Brazil, associated with the investment of resources from the P,D&I Clauses; the Sinochem Petróleo Brasil Ltda; and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) through a scholarship to Jade R dos Santos (142340/2020-0). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.