CRISPR/Cas9-mediated knockout of tnf-α1 in zebrafish reduces disease resistance after Edwardsiella piscicida bacterial infection

Fish Shellfish Immunol. 2024 Jan:144:109249. doi: 10.1016/j.fsi.2023.109249. Epub 2023 Nov 29.

Abstract

Tumor necrosis factor (TNF) is an important cytokine involved in immune responses to bacterial infections in vertebrates, including fish. Although Tnf-α is a well-studied cytokine, there are contradictory findings about Tnf-α function following bacterial infection. In this study, we analyzed the expression and function of the Tnf-α-type I isoform (Tnf-α1) in zebrafish by knockout experiments using the CRISPR/Cas9 gene-editing tool. The open reading frame of tnf-α1 encodes a 25.82 kDa protein with 234 amino acids (aa). The expression of tnf-α1 in the early stages of zebrafish was observed from the 2-cell stage. Adult zebrafish spleens showed the highest expression of tnf-α1. To evaluate the function of Tnf-α1, an 8 bp deletion in the target region, resulting in a short truncated protein of 55 aa, was used to create the tnf-α1 knockout mutant. The pattern of downstream gene expression in 7-day larvae in wild-type (WT) and tnf-α1 knockout fish was examined. We also verified the fish mortality rate after Edwardsiella piscicida challenge and found that it was much higher in tnf-α1 knockout fish than in WT fish. Additionally, downstream gene expression analyses after E. piscicida exposure revealed a distinct expression pattern in tnf-α1 knockout fish compared to that in WT fish. Overall, our study using tnf-α1 deletion in zebrafish confirmed that Tnf-α1 is critical for immune regulation during bacterial infection.

Keywords: CRISPR/Cas9; E. piscicida; Knock-out; Zebrafish: tnf- α1.

MeSH terms

  • Animals
  • Bacterial Proteins / genetics
  • CRISPR-Cas Systems
  • Cytokines / genetics
  • Disease Resistance / genetics
  • Edwardsiella* / physiology
  • Enterobacteriaceae Infections*
  • Fish Diseases*
  • Tumor Necrosis Factor-alpha / genetics
  • Tumor Necrosis Factor-alpha / metabolism
  • Zebrafish

Substances

  • Tumor Necrosis Factor-alpha
  • Cytokines
  • Bacterial Proteins

Supplementary concepts

  • Edwardsiella piscicida