Cas9 is mostly orthogonal to human systems of DNA break sensing and repair

PLoS One. 2023 Nov 29;18(11):e0294683. doi: 10.1371/journal.pone.0294683. eCollection 2023.

Abstract

CRISPR/Cas9 system is а powerful gene editing tool based on the RNA-guided cleavage of target DNA. The Cas9 activity can be modulated by proteins involved in DNA damage signalling and repair due to their interaction with double- and single-strand breaks (DSB and SSB, respectively) generated by wild-type Cas9 or Cas9 nickases. Here we address the interplay between Streptococcus pyogenes Cas9 and key DNA repair factors, including poly(ADP-ribose) polymerase 1 (SSB/DSB sensor), its closest homolog poly(ADP-ribose) polymerase 2, Ku antigen (DSB sensor), DNA ligase I (SSB sensor), replication protein A (DNA duplex destabilizer), and Y-box binding protein 1 (RNA/DNA binding protein). None of those significantly affected Cas9 activity, while Cas9 efficiently shielded DSBs and SSBs from their sensors. Poly(ADP-ribosyl)ation of Cas9 detected for poly(ADP-ribose) polymerase 2 had no apparent effect on the activity. In cellulo, Cas9-dependent gene editing was independent of poly(ADP-ribose) polymerase 1. Thus, Cas9 can be regarded as an enzyme mostly orthogonal to the natural regulation of human systems of DNA break sensing and repair.

MeSH terms

  • CRISPR-Cas Systems*
  • DNA / genetics
  • DNA / metabolism
  • DNA Breaks
  • DNA Damage
  • DNA Repair
  • Humans
  • Poly(ADP-ribose) Polymerases* / genetics
  • Poly(ADP-ribose) Polymerases* / metabolism
  • RNA

Substances

  • Poly(ADP-ribose) Polymerases
  • DNA
  • RNA

Grants and funding

This research was supported by Russian Science Foundation (grant 21-64-00017). Partial salary support from the Russian Ministry of Science and Higher Education (State funded budget project 121031300056-8 to D.O.Z.) is acknowledged. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.