Identification of Proteome-Based Immune Subtypes of Early Hepatocellular Carcinoma and Analysis of Potential Metabolic Drivers

Mol Cell Proteomics. 2024 Jan;23(1):100686. doi: 10.1016/j.mcpro.2023.100686. Epub 2023 Nov 25.

Abstract

Hepatocellular carcinoma (HCC) is a leading cause of cancer-related mortality worldwide, ranking fourth in frequency. The relationship between metabolic reprogramming and immune infiltration has been identified as having a crucial impact on HCC progression. However, a deeper understanding of the interplay between the immune system and metabolism in the HCC microenvironment is required. In this study, we used a proteomic dataset to identify three immune subtypes (IM1-IM3) in HCC, each of which has distinctive clinical, immune, and metabolic characteristics. Among these subtypes, IM3 was found to have the poorest prognosis, with the highest levels of immune infiltration and T-cell exhaustion. Furthermore, IM3 showed elevated glycolysis and reduced bile acid metabolism, which was strongly correlated with CD8 T cell exhaustion and regulatory T cell accumulation. Our study presents the proteomic immune stratification of HCC, revealing the possible link between immune cells and reprogramming of HCC glycolysis and bile acid metabolism, which may be a viable therapeutic strategy to improve HCC immunotherapy.

Keywords: bile acid metabolism; early-stage hepatocellular carcinoma; glycolysis; immune signatures; immune subtypes; proteomics.

MeSH terms

  • Bile Acids and Salts
  • Carcinoma, Hepatocellular*
  • Humans
  • Liver Neoplasms*
  • Proteome
  • Proteomics
  • Tumor Microenvironment

Substances

  • Proteome
  • Bile Acids and Salts