Horizontal acquisition of a DNA ligase improves DNA damage tolerance in eukaryotes

Nat Commun. 2023 Nov 22;14(1):7638. doi: 10.1038/s41467-023-43075-8.

Abstract

Bdelloid rotifers are part of the restricted circle of multicellular animals that can withstand a wide range of genotoxic stresses at any stage of their life cycle. In this study, bdelloid rotifer Adineta vaga is used as a model to decipher the molecular basis of their extreme tolerance. Proteomic analysis shows that a specific DNA ligase, different from those usually involved in DNA repair in eukaryotes, is strongly over-represented upon ionizing radiation. A phylogenetic analysis reveals its orthology to prokaryotic DNA ligase E, and its horizontal acquisition by bdelloid rotifers and plausibly other eukaryotes. The fungus Mortierella verticillata, having a single copy of this DNA Ligase E homolog, also exhibits an increased radiation tolerance with an over-expression of this DNA ligase E following X-ray exposure. We also provide evidence that A. vaga ligase E is a major contributor of DNA breaks ligation activity, which is a common step of all important DNA repair pathways. Consistently, its heterologous expression in human cell lines significantly improves their radio-tolerance. Overall, this study highlights the potential of horizontal gene transfers in eukaryotes, and their contribution to the adaptation to extreme conditions.

MeSH terms

  • Animals
  • DNA Damage
  • DNA Ligase ATP / genetics
  • DNA Ligase ATP / metabolism
  • DNA Ligases / genetics
  • DNA Ligases / metabolism
  • Eukaryota* / genetics
  • Humans
  • Ligases / metabolism
  • Phylogeny
  • Proteomics
  • Rotifera* / genetics

Substances

  • DNA Ligases
  • Ligases
  • DNA Ligase ATP