Engineered extracellular vesicles for delivering functional Cas9/gRNA to eliminate hepatitis B virus cccDNA and integration

Emerg Microbes Infect. 2024 Dec;13(1):2284286. doi: 10.1080/22221751.2023.2284286. Epub 2023 Dec 30.

Abstract

The persistence of HBV covalently closed circular DNA (cccDNA) and HBV integration into the host genome in infected hepatocytes pose significant challenges to the cure of chronic HBV infection. Although CRISPR/Cas9-mediated genome editing shows promise for targeted clearance of viral genomes, a safe and efficient delivery method is currently lacking. Here, we developed a novel approach by combining light-induced heterodimerization and protein acylation to enhance the loading efficiency of Cas9 protein into extracellular vesicles (EVs). Moreover, vesicular stomatitis virus-glycoprotein (VSV-G) was incorporated onto the EVs membrane, significantly facilitating the endosomal escape of Cas9 protein and increasing its gene editing activity in recipient cells. Our results demonstrated that engineered EVs containing Cas9/gRNA and VSV-G can effectively reduce viral antigens and cccDNA levels in the HBV-replicating and infected cell models. Notably, we also confirmed the antiviral activity and high safety of the engineered EVs in the HBV-replicating mouse model generated by hydrodynamic injection and the HBV transgenic mouse model. In conclusion, engineered EVs could successfully mediate functional CRISPR/Cas9 delivery both in vitro and in vivo, leading to the clearance of episomal cccDNA and integrated viral DNA fragments, and providing a novel therapeutic approach for curing chronic HBV infection.

Keywords: CRISPR/Cas9; Extracellular vesicles; antiviral therapy; gene editing; hepatitis B virus.

MeSH terms

  • Animals
  • CRISPR-Associated Protein 9 / genetics
  • CRISPR-Associated Protein 9 / metabolism
  • CRISPR-Associated Protein 9 / pharmacology
  • CRISPR-Cas Systems
  • DNA, Circular / genetics
  • DNA, Circular / metabolism
  • DNA, Viral / genetics
  • DNA, Viral / metabolism
  • Hepatitis B virus* / metabolism
  • Hepatitis B* / genetics
  • Mice
  • RNA, Guide, CRISPR-Cas Systems
  • Virus Replication

Substances

  • CRISPR-Associated Protein 9
  • DNA, Circular
  • RNA, Guide, CRISPR-Cas Systems
  • DNA, Viral

Grants and funding

This work was supported by the National Key R&D Program of China [grant number 2022YFA1303600], and the National Natural Science Foundation of China [grant number 82102393, 82072280, and 82272315].