Evolution and biological characterization of H5N1 influenza viruses bearing the clade 2.3.2.1 hemagglutinin gene

Emerg Microbes Infect. 2024 Dec;13(1):2284294. doi: 10.1080/22221751.2023.2284294. Epub 2024 Jan 4.

Abstract

H5N1 avian influenza viruses bearing the clade 2.3.2.1 hemagglutinin (HA) gene have been widely detected in birds and poultry in several countries. During our routine surveillance, we isolated 28 H5N1 viruses between January 2017 and October 2020. To investigate the genetic relationship of the globally circulating H5N1 viruses and the biological properties of those detected in China, we performed a detailed phylogenic analysis of 274 representative H5N1 strains and analyzed the antigenic properties, receptor-binding preference, and virulence in mice of the H5N1 viruses isolated in China. The phylogenic analysis indicated that the HA genes of the 274 viruses belonged to six subclades, namely clades 2.3.2.1a to 2.3.2.1f; these viruses acquired gene mutations and underwent complicated reassortment to form 58 genotypes, with G43 being the dominant genotype detected in eight Asian and African countries. The 28 H5N1 viruses detected in this study carried the HA of clade 2.3.2.1c (two strains), 2.3.2.1d (three strains), or 2.3.2.1f (23 strains), and formed eight genotypes. These viruses were antigenically well-matched with the H5-Re12 vaccine strain used in China. Animal studies showed that the pathogenicity of the H5N1 viruses ranged from non-lethal to highly lethal in mice. Moreover, the viruses exclusively bound to avian-type receptors and have not acquired the ability to bind to human-type receptors. Our study reveals the overall picture of the evolution of clade 2.3.2.1 H5N1 viruses and provides insights into the control of these viruses.

Keywords: Avian influenza virus; H5N1; antigenicity; clade 2.3.2.1; evolution; pathogenicity.

MeSH terms

  • Animals
  • Birds
  • Chickens
  • Hemagglutinin Glycoproteins, Influenza Virus / chemistry
  • Hemagglutinins / genetics
  • Humans
  • Influenza A Virus, H5N1 Subtype*
  • Influenza in Birds*
  • Mice
  • Phylogeny
  • Poultry

Substances

  • Hemagglutinins
  • Hemagglutinin Glycoproteins, Influenza Virus

Grants and funding

This work was supported by the National Key Research and Development Program of China: [Grant Numbers 2021YFD1800200, 2021YFC2301700, and 2022YFC2303801]; the National Natural Science Foundation of China: [Grant Number 32192451]; the Laboratory for Lingnan Modern Agriculture Project: [Grant Number NT2021007]; Central Public-interest Scientific Institution Basal Research Fund: [Grant Number 1610302022016]; Innovation Program of Chinese Academy of Agricultural Sciences [Grant number CAAS-CSLPDCP-202301]; and the China Agriculture Research System: [Grant Number CARS-41G12]. The funders had no role in the study design, data collection, data analysis, preparation of the manuscript, or decision to publish.