Severe Zellweger spectrum disorder due to a novel missense variant in the PEX13 gene: A case report and the literature review

Mol Genet Genomic Med. 2024 Jan;12(1):e2315. doi: 10.1002/mgg3.2315. Epub 2023 Nov 14.

Abstract

Background: Peroxisome biogenesis disorders (PBDs) are caused by variants in PEX genes that impair peroxisome function. Zellweger spectrum disorders (ZSDs) are the most severe and common subtype of PBDs, affecting multiple organ systems due to peroxisomal involvement in various metabolic functions. PEX13 gene variants are rare causes of ZSDs, with only 21 cases reported worldwide and none in China.

Methods: We describe an infant with biochemically and molecularly confirmed ZSDs due to variants in the PEX13 gene, identified by whole exome sequencing and validated by Sanger sequencing. The patient's treatment and prognosis were followed up. We also reviewed the literature on previously reported cases with PEX13 variants.

Results: The patient had severe hypotonia, seizures, hepatic dysfunction, failure to thrive, and dysmorphic features. Serum analysis revealed elevated levels of very long-chain fatty acids (VLCFA), phytanic acid, and pipecolic acid. We detected a novel homozygous missense variant c.493G>C (p. Ala165Pro) in the PEX13 gene (NM_002618.3), which caused severe clinical manifestations and was inherited from the consanguineous parents. The patient died at the age of 14 months.

Conclusion: We report the first case of ZSDs due to the PEX13 variant in China. Our findings broaden the mutational spectrum of the PEX13 gene and indicate that missense variants can lead to severe ZSDs phenotypes, which has implications for genotype-phenotype correlations and genetic counseling.

Keywords: PEX13; Zellweger spectrum disorders; hypotonia; variant.

Publication types

  • Case Reports

MeSH terms

  • Humans
  • Infant
  • Membrane Proteins / genetics
  • Membrane Proteins / metabolism
  • Mutation
  • Mutation, Missense
  • Peroxisomal Disorders* / genetics
  • Zellweger Syndrome* / genetics
  • Zellweger Syndrome* / metabolism

Substances

  • PEX13 protein, human
  • Membrane Proteins

Supplementary concepts

  • Peroxisome biogenesis disorders