Collagen a1(XI) structure prediction by Alphafold 2

Proc (Int Conf Comput Sci Comput Intell). 2022 Dec:2022:572-577. doi: 10.1109/csci58124.2022.00108. Epub 2023 Aug 25.

Abstract

Collagen α1(XI) is a minor fibrillar collagen involved in the critical regulation of collagen fibrils such as nucleation, assembly, and regulation of fibril diameter. The amino propeptide domain of the collagen α1(XI) is retained on the surface of the collagen fibril for an extended period of time and may play a crucial role in the interaction with extracellular matrix glycosaminoglycans and other proteins during the process of fibrillogenesis. Understanding the mechanism of action of this protein will ultimately help us understand the organization and assembly of the extracellular matrix that underlies the structural integrity of connective tissues.

Keywords: Alphafold 2; amino propeptide domain; collagen α1(XI); fibrillogenesis; glycosaminoglycans.