Self-assembly of promoter DNA and RNA Pol II machinery into transcriptionally active biomolecular condensates

Sci Adv. 2023 Oct 20;9(42):eadi4565. doi: 10.1126/sciadv.adi4565. Epub 2023 Oct 18.

Abstract

Transcription in the nucleus occurs in a concentrated, dense environment, and no reasonable biochemical facsimile of this milieu exists. Such a biochemical environment would be important for further understanding transcriptional regulation. We describe here the formation of dense, transcriptionally active bodies in vitro with only nuclear extracts and promoter DNA. These biomolecular condensates (BMCs) are 0.5 to 1 μm in diameter, have a macromolecular density of approximately 100 mg/ml, and are a consequence of a phase transition between promoter DNA and nuclear extract proteins. BMCs are physically associated with transcription as any disruption of one compromised the other. The BMCs contain RNA polymerase II and elongation factors, as well as factors necessary for BMC formation in vivo. We suggest that BMCs are representative of the in vivo nuclear environment and a more physiologically relevant manifestation of the preinitiation complex/elongation machinery.

MeSH terms

  • Biomolecular Condensates
  • DNA / genetics
  • Nuclear Proteins / metabolism
  • Promoter Regions, Genetic
  • RNA Polymerase II* / genetics
  • RNA Polymerase II* / metabolism
  • Transcription, Genetic*

Substances

  • RNA Polymerase II
  • DNA
  • Nuclear Proteins