The ATF4-regulated LncRNA MALAT1 promotes odontoblastic differentiation of human dental pulp stem cells via histone demethylase JMJD3: An in vitro study

Int Endod J. 2024 Jan;57(1):50-63. doi: 10.1111/iej.13984. Epub 2023 Oct 13.

Abstract

Aim: This study aimed to investigate the upstream regulators and specific mechanisms of metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) in the odontoblastic differentiation of human dental pulp stem cells (hDPSCs).

Methodology: Human dental pulp stem cells were isolated and cultured, followed by conducting loss- or gain-of-function experiments on ATF4 and loss experiments on MALAT1 to elucidate their respective biological functions in odontoblastic differentiation. Chromatin immunoprecipitation assays and RNA immunoprecipitation were performed to uncover the interaction between ATF4-MALAT1 and MALAT1-JMJD3, respectively. The odontoblastic differentiation was estimated by the mRNA and protein of DSPP and DMP1, as well as alkaline phosphatase staining.

Results: Expression of MALAT1 was upregulated in the hDPSCs cultured in an odontoblastic medium, and MALAT1 downregulation suppressed the odontoblastic differentiation of the hDPSCs. Subsequent experiments confirmed that ATF4 promoted odontoblastic differentiation and induced MALAT1 expression by binding to the MALAT1 promoter region. Further experiments revealed that nuclear MALAT1 interacted with JMJD3. MALAT1 knockdown decreased the JMJD3 protein level and demethylase activity, and it enhanced H3K27me3 occupancy of the promoter region of DSPP and DMP1, resulting in the inhibition of DSPP and DMP1 transcription. Importantly, JMJD3 overexpression significantly attenuated the inhibition of odontoblastic differentiation induced by MALAT1 knockdown.

Conclusions: ATF4-regulated MALAT1 plays a positive regulatory role in odontoblastic differentiation of hDPSCs through JMJD3-mediated H3K27me3 modifications of the DSPP and DMP1 promoters.

Keywords: ATF4; JMJD3; MALAT1; differentiation; human dental pulp stem cells.

MeSH terms

  • Activating Transcription Factor 4 / metabolism
  • Cell Differentiation*
  • Cells, Cultured
  • Dental Pulp
  • Extracellular Matrix Proteins / genetics
  • Extracellular Matrix Proteins / metabolism
  • Histone Demethylases / metabolism
  • Histones / metabolism
  • Humans
  • Jumonji Domain-Containing Histone Demethylases* / genetics
  • Jumonji Domain-Containing Histone Demethylases* / metabolism
  • Odontoblasts*
  • RNA, Long Noncoding* / genetics
  • RNA, Long Noncoding* / metabolism
  • Stem Cells

Substances

  • Activating Transcription Factor 4
  • ATF4 protein, human
  • Extracellular Matrix Proteins
  • Histone Demethylases
  • Histones
  • RNA, Long Noncoding
  • MALAT1 long non-coding RNA, human
  • KDM6B protein, human
  • Jumonji Domain-Containing Histone Demethylases