Optimization and prospective evaluation of sensitive real-time PCR assays with an internal control for the diagnosis of melioidosis in Thailand

Microbiol Spectr. 2023 Dec 12;11(6):e0103923. doi: 10.1128/spectrum.01039-23. Epub 2023 Oct 11.

Abstract

Melioidosis is a serious infectious disease caused by Burkholderia pseudomallei, an environmental Gram-negative bacterium. Early detection of B. pseudomallei infection is crucial for successful antibiotic treatment and reducing mortality rates associated with melioidosis. Bacteria culture is currently used to identify B. pseudomallei in clinical samples, but the method is slow. Therefore, there is a need for more accurate and sensitive molecular-based diagnostic methods that can detect B. pseudomallei in all sample types, including samples from blood. We developed an optimal DNA extraction method for B. pseudomallei from plasma samples and used an internal control for real-time PCR. We evaluated six PCR target genes and identified the most effective target for the early detection of B. pseudomallei infection in patients. To prevent delays in the treatment of melioidosis that can lead to fatal outcomes, we recommend implementing this new approach for routine early detection of B. pseudomallei in clinical settings.

Keywords: BPSS0087; BPSS0745; BPSS1187; BPSS1492; BPSS1498; Burkholderia pseudomallei; PCR; TTS1-orf2; diagnosis; internal control; melioidosis.

MeSH terms

  • Burkholderia pseudomallei* / genetics
  • Humans
  • Melioidosis* / diagnosis
  • Melioidosis* / microbiology
  • Nucleic Acid Amplification Techniques / methods
  • Real-Time Polymerase Chain Reaction / methods
  • Thailand