Genome-based metabolic and phylogenomic analysis of three Terrisporobacter species

PLoS One. 2023 Oct 10;18(10):e0290128. doi: 10.1371/journal.pone.0290128. eCollection 2023.

Abstract

Acetogenic bacteria are of high interest for biotechnological applications as industrial platform organisms, however, acetogenic strains from the genus Terrisporobacter have hitherto been neglected. To date, three published type strains of the genus Terrisporobacter are only covered by draft genome sequences, and the genes and pathway responsible for acetogenesis have not been analyzed. Here, we report complete genome sequences of the bacterial type strains Terrisporobacter petrolearius JCM 19845T, Terrisporobacter mayombei DSM 6539T and Terrisporobacter glycolicus DSM 1288T. Functional annotation, KEGG pathway module reconstructions and screening for virulence factors were performed. Various species-specific vitamin, cofactor and amino acid auxotrophies were identified and a model for acetogenesis of Terrisporobacter was constructed. The complete genomes harbored a gene cluster for the reductive proline-dependent branch of the Stickland reaction located on an approximately 21 kb plasmid, which is exclusively found in the Terrisporobacter genus. Phylogenomic analysis of available Terrisporobacter genomes suggested a reclassification of most isolates as T. glycolicus into T. petrolearius.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Clostridium* / genetics
  • DNA, Bacterial / genetics
  • Genome*
  • Phylogeny
  • Plasmids
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA

Substances

  • RNA, Ribosomal, 16S
  • DNA, Bacterial

Grants and funding

This work was supported by the Open Access Publication Funds of the University of Göttingen. Furthermore, we acknowledge the support of T.B. by the “Deutsche Bundesstiftung Umwelt” (DBU; 20020/640) and partial support of A.P. by the BMBF (ThermoSynCon; 031B0857C). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.