Two species of Pseudodiscocotyla Yamaguti, 1965 (Monogenea: Discocotylidae) were collected from crimson jobfish Pristipomoides filamentosus (Valenciennes) (Perciformes: Lutjanidae) off Okinawa-jima island, southern Japan. Pseudodiscocotyla opakapaka is redescribed and represents the first Japanese record. A new species, Pseudodiscocotyla mikiae n. sp., differs from Ps. opakapaka in the absence of spines around the male genital pore, the shape of the vaginal pore, the presence of spines inside the vaginal pore, and the shape of the clamp. The locations of the male genital atrium and the vaginal pore in both species were similar, and the observed armament differences of the male copulatory organ are therefore presumed to establish reproductive isolation. The phylogenetic trees for the Mazocraeidea based on the partial 28S rDNA sequences were created using new sequences of Pseudodiscocotyla mikiae n. sp., and Discocotylidae formed a sister group with the species Diclidophoridae, Macrovalvitrematidae, and Plectanocotylidae. Pristipomoides filamentosus is widely distributed across the Indo-Pacific, and Pseudodiscocotyla mikiae n. sp. could share the distribution of the host.
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