Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks

PLoS One. 2023 Oct 4;18(10):e0289983. doi: 10.1371/journal.pone.0289983. eCollection 2023.

Abstract

Lao Pa Koi (LPK) chicken is a popular fighting breed in Thailand, prized for (its unique characteristics acquired by selective breeding), and a valuable model for exploring the genetic diversity and admixture of red junglefowls and domestic chickens. In this study, genetic structure and diversity of LPK chicken were assessed using 28 microsatellite markers and mitochondrial DNA (mtDNA) D-loop sequences, and the findings were compared to a gene pool library from "The Siam Chicken Bioresource Project". High genetic variability was observed in LPK chickens using mtDNA D-loop haplotype analysis, and six haplotypes were identified. Microsatellite data revealed 182 alleles, with an average of 6.5 alleles per locus. These results confirmed the occurrence of genetic admixture of red junglefowl and Thai domestic chickens in LPK chicken breed. A maximum entropy modeling approach was used to analyze the spatial suitability and to assess the adaptive evolution of LPK chickens in diverse local environments. The model identified 82.52% of the area studied as unsuitable, and 9.34%, 7.11%, and 2.02% of the area indicated moderate, low, and high suitability, respectively. The highest contribution rate to land suitability for LPK chickens was found at an elevation of 100-250 m, suggesting the importance of elevation for their potential distribution. The results of this study provide valuable insights into the genetic origin of LPK chicken breed and identify resources for future genetic improvement.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chickens* / genetics
  • DNA, Mitochondrial / genetics
  • Genetic Variation*
  • Haplotypes
  • Phylogeny
  • Thailand

Substances

  • DNA, Mitochondrial

Grants and funding

This study was funded by the High-Quality Research Graduate Development Cooperation Project between Kasetsart University and the National Science and Technology Development Agency (NSTDA) (grant number 6517400214) awarded to TB and (grant number 6417400247) awarded to TP; National Science and Technology Development Agency (NSTDA) (grant numbers NSTDA P-19-52238 and JRA-CO-2564-14003-TH) awarded to KS; Kasetsart University Research and Development Institute (grant number FF(KU)25.64) awarded to KS; Betagro Group (grant number 6501.0901.1/68) awarded to KS; Thailand Science Research and Innovation through the Kasetsart University Reinventing University Program 2021 (grant number 3/2564) awarded to KS; Higher Education for Industry Consortium (Hi-FI) (grant number 6514400949) awarded to PC and (grant number 6414400777) awarded to NA; Office of the Ministry of Higher Education, Science, Research, and Innovation, awarded to KS; International SciKU Branding (ISB), Faculty of Science, Kasetsart University awarded to WS, SFA, and KS; and finally, The NSRF via the Program Management Unit for Human Resources & Institutional Development, Research and Innovation (grant number 25669999123064) awarded to PW, WS, AC, SFA, NM, and KS. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.