Silvimonas soli sp. nov., a new member of Chromobacteriaceae isolated from soil in Norrbyskär island, Sweden

Int J Syst Evol Microbiol. 2023 Sep;73(9). doi: 10.1099/ijsem.0.006048.

Abstract

A novel bacterial species is described that was isolated from the soil of Norrbyskär island (Sweden). This Gram-negative, facultatively anaerobic and motile rod, designated 17-6T, was classified in the family Chromobacteriaceae, class Betaproteobacteria, and further characterized by a polyphasic approach. Comparative 16S rRNA gene analysis revealed the potential species novelty of the strain, with Silvimonas terrae (98.20 % similarity) and Silvimonas amylolytica (98.13 %) being its closest type strains. The phylogenetic novelty of the isolate at the level of species was confirmed using phylogenetic analyses based on the whole genome: average nucleotide identity values ranged from 79 to 81 %, average amino acid identity values from 75 to 81 % and percentage of conserved proteins values from 69-81 % with the members of genera Silvimonas and Amantichitinum. On the basis of phenotypic, phylogenetic, functional and genotypic analyses, we propose the isolate as the type strain of a novel species within the genus Silvimonas with the designation Silvimonas soli 17-6T (=DSM 115342T=CCM 9308T).

Keywords: 16S rRNA gene analysis; Chromobacteriaceae; Norrbyskär; Silvimonas; novel species; soil bacteria; whole genome sequencing.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Betaproteobacteria*
  • DNA, Bacterial / genetics
  • Fatty Acids* / chemistry
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil
  • Soil Microbiology
  • Sweden

Substances

  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Soil
  • DNA, Bacterial