Whole genome transcriptome data from the WT cortex and hippocampus of female and male control and APP/PS1 Alzheimer's disease mice

Anna Papazoglou; Christina Henseler; Sandra Weickhardt; Johanna Daubner; Teresa Schiffer; Karl Broich; Jürgen Hescheler; Dan Ehninger; Catharina Scholl; Britta Haenisch; Agapios Sachinidis; Marco Weiergräber

doi:10.1016/j.dib.2023.109594

Whole genome transcriptome data from the WT cortex and hippocampus of female and male control and APP/PS1 Alzheimer's disease mice

Data Brief. 2023 Sep 18:50:109594. doi: 10.1016/j.dib.2023.109594. eCollection 2023 Oct.

Authors

Anna Papazoglou¹, Christina Henseler¹, Sandra Weickhardt², Johanna Daubner¹, Teresa Schiffer¹, Karl Broich², Jürgen Hescheler^{3

4}, Dan Ehninger^{5

6}, Catharina Scholl², Britta Haenisch^{2

6

7}, Agapios Sachinidis^{3

4}, Marco Weiergräber^{1

3

4}

Affiliations

¹ Experimental Neuropsychopharmacology, Federal Institute for Drugs and Medical Devices (Bundesinstitut für Arzneimittel und Medizinprodukte, BfArM), Kurt Georg-Kiesinger-Allee 3, 53175 Bonn, Germany.
² Federal Institute for Drugs and Medical Devices (Bundesinstitut für Arzneimittel und Medizinprodukte, BfArM), Kurt-Georg-Kiesinger-Allee 3, 53175 Bonn, Germany.
³ Faculty of Medicine, Institute of Neurophysiology, University of Cologne, Robert-Koch-Str. 39, 50931 Cologne, Germany.
⁴ Center of Physiology and Pathophysiology, Faculty of Medicine, University of Cologne, Robert-Koch-Str. 39, 50931 Cologne, Germany.
⁵ Translational Biogerontology, German Center for Neurodegenerative Diseases (Deutsches Zentrum für Neurodegenerative Erkrankungen, DZNE), Venusberg-Campus 1/99, 53127 Bonn, Germany.
⁶ German Center for Neurodegenerative Diseases (Deutsches Zentrum für Neurodegenerative Erkrankungen, DZNE), Venusberg-Campus 1/99, 53127 Bonn, Germany.
⁷ Center for Translational Medicine, Medical Faculty, University of Bonn, 53113 Bonn, Germany.

Abstract

A variety of Alzheimer disease (AD) mouse models has been established and characterized within the last decades. These models are generated to meet the principal criteria of AD isomorphism, homology and predictability to a maximum extent. To get an integrative view of the sophisticated etiopathogenesis of AD, whole genome transcriptome data analysis turns out to be indispensable. Here, we present a microarray-based transcriptome data collection based on RNA extracted from the retrosplenial (RS) cortex and the hippocampus of APP/PS1 AD mice and control animals. Experimental animals were age matched and importantly, both sexes were considered separately. Isolated RNA was purified, quantified und quality controlled prior to the hybridization procedure with SurePrint G3 Mouse Gene Expression v2 8 × 60K microarrays. Following immunofluorescent measurement und preprocessing/extraction of image data, raw transcriptome data were uploaded including differentially expressed gene candidates and related fold changes in APP/PS1 AD mice and controls. Our data allow further insight into alterations in gene transcript levels in APP/PS1 AD mice compared to controls and enable the reader/user to carry out complex transcriptome analysis to characterize potential age-, sex- and brain-region-specific alterations in e.g., neuroinflammatory, immunological, neurodegenerative and ion channel pathways.

Keywords: Amyloid precursor protein; Brain; Hippocampus; Hybridization; Microarray; RNA; Retrosplenial (RS) cortex; Transcriptome.