New SLC22A12 (URAT1) Variant Associated with Renal Hypouricemia Identified by Whole-Exome Sequencing Analysis and Bioinformatics Predictions

Genes (Basel). 2023 Sep 20;14(9):1823. doi: 10.3390/genes14091823.

Abstract

Renal hypouricemia (RHUC) is a rare hereditary disorder caused by loss-of-function mutations in the SLC22A12 (RHUC type 1) or SLC2A9 (RHUC type 2) genes, encoding urate transporters URAT1 and GLUT9, respectively, that reabsorb urate in the renal proximal tubule. The characteristics of this disorder are low serum urate levels, high renal fractional excretion of urate, and occasional severe complications such as nephrolithiasis and exercise-induced acute renal failure. In this study, we report two Spanish (Caucasian) siblings and a Pakistani boy with clinical characteristics compatible with RHUC. Whole-exome sequencing (WES) analysis identified two homozygous variants: a novel pathogenic SLC22A12 variant, c.1523G>A; p.(S508N), in the two Caucasian siblings and a previously reported SLC2A9 variant, c.646G>A; p.(G216R), in the Pakistani boy. Our findings suggest that these two mutations cause RHUC through loss of urate reabsorption and extend the SLC22A12 mutation spectrum. In addition, this work further emphasizes the importance of WES analysis in clinical settings.

Keywords: SLC22A12; SLC2A9; glucose transporter 9; mutation; rare disease; renal hypouricemia; urate transport 1; whole-exome sequence analysis.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology
  • Exome Sequencing
  • Glucose Transport Proteins, Facilitative / genetics
  • Humans
  • Male
  • Organic Anion Transporters* / genetics
  • Organic Cation Transport Proteins / genetics
  • Rare Diseases
  • Renal Tubular Transport, Inborn Errors* / genetics
  • Uric Acid

Substances

  • Uric Acid
  • SLC22A12 protein, human
  • Organic Anion Transporters
  • Organic Cation Transport Proteins
  • SLC2A9 protein, human
  • Glucose Transport Proteins, Facilitative

Supplementary concepts

  • Renal hypouricemia

Grants and funding

This study was supported by grant PI20/00652 co-financed by the Instituto de Salud Carlos III-Subdireccion General de Evaluacion y Fomento de la Investigacion and the European Regional Development Fund “Another way to build Europe”.