Predicting Patterns of Distant Metastasis in Breast Cancer Patients following Local Regional Therapy Using Machine Learning

Genes (Basel). 2023 Sep 7;14(9):1768. doi: 10.3390/genes14091768.

Abstract

Up to 30% of breast cancer (BC) patients will develop distant metastases (DM), for which there is no cure. Here, statistical and machine learning (ML) models were developed to estimate the risk of site-specific DM following local-regional therapy. This retrospective study cohort included 175 patients diagnosed with invasive BC who later developed DM. Clinicopathological information was collected for analysis. Outcome variables were the first site of metastasis (brain, bone or visceral) and the time interval (months) to developing DM. Multivariate statistical analysis and ML-based multivariable gradient boosting machines identified factors associated with these outcomes. Machine learning models predicted the site of DM, demonstrating an area under the curve of 0.74, 0.75, and 0.73 for brain, bone and visceral sites, respectively. Overall, most patients (57%) developed bone metastases, with increased odds associated with estrogen receptor (ER) positivity. Human epidermal growth factor receptor-2 (HER2) positivity and non-anthracycline chemotherapy regimens were associated with a decreased risk of bone DM, while brain metastasis was associated with ER-negativity. Furthermore, non-anthracycline chemotherapy alone was a significant predictor of visceral metastasis. Here, clinicopathologic and treatment variables used in ML prediction models predict the first site of metastasis in BC. Further validation may guide focused patient-specific surveillance practices.

Keywords: breast cancer metastasis; machine learning; metastatic patterns; prediction models.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brain
  • Breast
  • Breast Neoplasms* / drug therapy
  • Female
  • Humans
  • Machine Learning
  • Retrospective Studies

Grants and funding

WTT received grant funding from the Tri-Council (CIHR) Government of Canada’s New Frontiers in Research Fund (NFRF, Grant # NFRFE-2019-00193) and AMS Healthcare. ASN laboratory is funded by the TFRI (Grant # 1083), NFRF (Grant #: NFRFE-2019-00193) and by the Natural Sciences and Engineering Research Council (NSERC, Grant #: RGPIN-2016-06472 and CRDPJ507521-16).