MALDI mass spectrometry-based identification of antifungal molecules from endophytic Bacillus strains with biocontrol potential of Lasiodiplodia theobromae, a grapevine trunk pathogen in Peru

Manuel Saucedo-Bazalar; Pedro Masias; Estefanía Nouchi-Moromizato; César Santos; Eric Mialhe; Virna Cedeño

doi:10.1016/j.crmicr.2023.100201

MALDI mass spectrometry-based identification of antifungal molecules from endophytic Bacillus strains with biocontrol potential of Lasiodiplodia theobromae, a grapevine trunk pathogen in Peru

Curr Res Microb Sci. 2023 Sep 9:5:100201. doi: 10.1016/j.crmicr.2023.100201. eCollection 2023.

Authors

Manuel Saucedo-Bazalar^{1

2}, Pedro Masias³, Estefanía Nouchi-Moromizato², César Santos³, Eric Mialhe³, Virna Cedeño^{3

4

5}

Affiliations

¹ Departamento de Biología y Bioquímica, Universidad Nacional de Tumbes, Av. Universitaria s/n, Pampa Grande, Tumbes, Peru.
² Programa de Maestría en Biotecnología Molecular, Escuela de Posgrado, Universidad Nacional de Tumbes, Av. Universitaria s/n, Pampa Grande, Tumbes, Peru.
³ INCABIOTEC SAC, Jr. Filipinas 212, Tumbes, Peru.
⁴ CONCEPTO AZUL, Circunvalación Norte, 528 B, Urdesa, Guayaquil, Ecuador.
⁵ CEBIOMICS S.A. Calle 28 #2624 y Avenida Flavio Reyes, Manta, Ecuador.

Abstract

Lasiodiplodia theobromae, a grapevine trunk pathogen, is becoming a significant threat to vineyards worldwide. In Peru, it is responsible for Botryosphaeria dieback in many grapevine-growing areas and it has spread rapidly due to its high transmissibility; hence, control measures are urgent. It is known that some endophytic bacteria are strong inhibitors of phytopathogens because they produce a wide range of antimicrobial molecules. However, studies of antimicrobial features from endophytic bacteria are limited to traditional confrontation methods. In this study, a MALDI mass spectrometry-based approach was performed to identify and characterize the antifungal molecules from Bacillus velezensis M1 and Bacillus amyloliquefaciens M2 grapevine endophytic strains. Solid medium antagonism assays were performed confronting B. velezensis M1 - L. theobromae and B. amyloliquefaciens M2 - L. theobromae for antifungal lipopeptides identification. By a MALDI TOF MS it was possible identify mass spectra for fengycin, iturin and surfactin protoned isoforms. Masses spectrums for mycobacillin and mycosubtilin were also identified. Using MALDI Imaging MS we were able to visualize and relate lipopeptides mass spectra of fengycin (1463.9 m/z) and mycobacillin (1529.6 m/z) in the interaction zone during confrontations. The presence of lipopeptides-synthesis genes was confirmed by PCR. Liquid medium antagonism assays were performed for a proteomic analysis during the confrontation of B. velezensis M1 - L. theobromae. Different peptide sequences corresponding to many antifungal proteins and enzymes were identified by MALDI TOF MS/MS. Oxalate decarboxylase bacisubin and flagellin, reported as antifungal proteins, were identified at 99 % identity through peptide mapping. MALDI mass spectrometry-based identification of antifungal molecules would allow the early selection of endophytic bacteria with antifungal features. This omics tool could lead to measures for prevention of grapevine diseases and other economically important crops in Peru.

Keywords: Antifungal proteins; Endophytic bacteria; Grapevine; Lasiodiplodia theobromae; Lipopeptides; MALDI imaging mass spectrometry.