Double Stranded DNA Binding Stapled Peptides: An Emerging Tool for Transcriptional Regulation

Chembiochem. 2023 Dec 14;24(24):e202300594. doi: 10.1002/cbic.202300594. Epub 2023 Oct 16.

Abstract

Stapled peptides have rapidly established themselves as a powerful technique to mimic α-helical interactions with a short peptide sequence. There are many examples of stapled peptides that successfully disrupt α-helix-mediated protein-protein interactions, with an example currently in clinical trials. DNA-protein interactions are also often mediated by α-helices and are involved in all transcriptional regulation processes. Unlike DNA-binding small molecules, which typically lack DNA sequence selectivity, DNA-binding proteins bind with high affinity and high selectivity. These are ideal candidates for the design DNA-binding stapled peptides. Despite the parallel to protein-protein interaction disrupting stapled peptides and the need for sequence specific DNA binders, there are very few DNA-binding stapled peptides. In this review we examine all the known DNA-binding stapled peptides. Their design concepts are compared to stapled peptides that disrupt protein-protein interactions and based on the few examples in the literature, DNA-binding stapled peptide trends are discussed.

Keywords: DNA-binding proteins; major groove; sequence specific; transcriptional inhibition; α-helical stapled peptides.

Publication types

  • Review

MeSH terms

  • Amino Acid Sequence
  • DNA
  • Gene Expression Regulation*
  • Peptides* / chemistry

Substances

  • Peptides
  • DNA