Genomic and proteomic characterization of vB_SauM-UFV_DC4, a novel Staphylococcus jumbo phage

Appl Microbiol Biotechnol. 2023 Dec;107(23):7231-7250. doi: 10.1007/s00253-023-12743-6. Epub 2023 Sep 23.

Abstract

Staphylococcus aureus is one of the most relevant mastitis pathogens in dairy cattle, and the acquisition of antimicrobial resistance genes presents a significant health issue in both veterinary and human fields. Among the different strategies to tackle S. aureus infection in livestock, bacteriophages have been thoroughly investigated in the last decades; however, few specimens of the so-called jumbo phages capable of infecting S. aureus have been described. Herein, we report the biological, genomic, and structural proteomic features of the jumbo phage vB_SauM-UFV_DC4 (DC4). DC4 exhibited a remarkable killing activity against S. aureus isolated from the veterinary environment and stability at alkaline conditions (pH 4 to 12). The complete genome of DC4 is 263,185 bp (GC content: 25%), encodes 263 predicted CDSs (80% without an assigned function), 1 tRNA (Phe-tRNA), multisubunit RNA polymerase, and an RNA-dependent DNA polymerase. Moreover, comparative analysis revealed that DC4 can be considered a new viral species belonging to a new genus DC4 and showed a similar set of lytic proteins and depolymerase activity with closely related jumbo phages. The characterization of a new S. aureus jumbo phage increases our understanding of the diversity of this group and provides insights into the biotechnological potential of these viruses. KEY POINTS: • vB_SauM-UFV_DC4 is a new viral species belonging to a new genus within the class Caudoviricetes. • vB_SauM-UFV_DC4 carries a set of RNA polymerase subunits and an RNA-directed DNA polymerase. • vB_SauM-UFV_DC4 and closely related jumbo phages showed a similar set of lytic proteins.

Keywords: Bovine mastitis; Endolysin; Jumbo phages; Staphylococcus aureus; VAPGH.

MeSH terms

  • Animals
  • Bacteriophages* / genetics
  • Cattle
  • DNA-Directed RNA Polymerases / genetics
  • Female
  • Genome, Viral
  • Genomics
  • Humans
  • Proteomics
  • RNA, Transfer
  • Staphylococcus Phages* / genetics
  • Staphylococcus aureus / genetics

Substances

  • DNA-Directed RNA Polymerases
  • RNA, Transfer