Identification and validation of a fatty acid metabolism gene signature for the promotion of metastasis in liver cancer

Zhenshan Zhang; Jun Sun; Chao Jin; Likun Zhang; Leilei Wu; Gendong Tian

doi:10.3892/ol.2023.14044

Identification and validation of a fatty acid metabolism gene signature for the promotion of metastasis in liver cancer

Oncol Lett. 2023 Sep 6;26(4):457. doi: 10.3892/ol.2023.14044. eCollection 2023 Oct.

Authors

Zhenshan Zhang^{1

2}, Jun Sun¹, Chao Jin^{3

4}, Likun Zhang⁵, Leilei Wu⁶, Gendong Tian¹

Affiliations

¹ Department of Hepatobiliary Surgery, The Second Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong 250033, P.R. China.
² Department of Radiation Oncology, Shanghai Proton and Heavy Ion Center, Shanghai 201321, P.R. China.
³ Department of Ocean, Shandong University, Weihai, Shandong 264209, P.R. China.
⁴ Department of Pharmacy, Zhejiang Qianji Fang Pharmaceutical Technology Co., Ltd., Hangzhou, Zhejiang 311710, P.R. China.
⁵ Department of Clinical Medicine, Qiqihar Medical University, Qiqihar, Heilongjiang 161003, P.R. China.
⁶ Department of Radiation Oncology, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, P.R. China.

Abstract

Metastasis is a fatal status for liver cancer, and the identification of an effective prediction model and promising therapeutic target is essential. Given the known relationship between fatty acid (FA) metabolism and the liver, the present study aimed to investigate dysregulation of genes associated with FA metabolism in liver cancer. Bioinformatics analyses were performed on data from patients with hepatocellular carcinoma (HCC) obtained from The Cancer Genome Atlas database using R software packages. Online public tools such as the Human Protein Atlas, Tumor Immune Single-Cell Hub and the University of Alabama at Birmingham Cancer Data Analysis portal were also utilized. Some essential results were further verified using in vitro experiments using HepG2 liver cancer cells. A signature consisting of three genes associated with the progression and prognosis of HCC and FA metabolism was identified. When samples were scored based on the expression of these genes and divided according to the median value, the higher score group showed a worse outcome and repressive immune microenvironment than the lower score group. Downstream pathways such as hypoxia, IL6/JAK/STAT3 and epithelial-mesenchymal transition were found to be significantly activated in the higher score group. As the core factor in the signature, mitochondrial ribosomal protein L35 (MRPL35) was found to be upregulated in HCC and to have certain impacts on the dysregulation of effective immunity. Further investigations and in vitro experiments indicated that MRPL35 facilitates the migration and invasion abilities of liver cancer, and the resistance of HCC to treatment. These findings have important implications regarding the characteristics and mechanisms of metastasis in liver cancer, and provide a promising signature based on FA metabolism-related genes that may be used to predict outcomes and explored as a novel therapeutic target in liver cancer.

Keywords: MRPL35; fatty acid metabolism; hepatocellular carcinoma; liver cancer; metastasis.

Grants and funding

Funding: No funding was received.