Genome-wide identification and gene expression analysis of GHMP kinase gene family in banana cv. Rasthali

Mol Biol Rep. 2023 Nov;50(11):9061-9072. doi: 10.1007/s11033-023-08743-4. Epub 2023 Sep 20.

Abstract

Background: The GHMP kinase gene family encompasses ATP-dependent kinases, significantly involved in the biosynthesis of isoprenes, amino acids, and metabolism of carbohydrates. Banana is a staple tropical crop that is globally consumed but known for high sensitivity to salt, cold, and drought stresses. The GHMP kinases are known to play a significant role during abiotic stresses in plants. The present study emphasizes the role of GHMP kinases in various abiotic stress conditions in banana.

Methods and results: We identified 12 GHMP kinase (MaGHMP kinase) genes in the banana genome database and witnessed the presence of the conserved Pro-X-X-X-Gly-Leu-X-Ser-Ser-Ala domain in their protein sequences. All genes were found to be involved in ATP-binding and carried kinase activity confronting their biological roles in the isoprene (27%) and amino acid (20%) biosyntheses. The expression analysis of genes during cold, drought, and salt stress conditions in tissue culture grown banana cultivar Rasthali plants showed a significant involvement of MaGHMP kinase genes in these stress conditions. The highest expression of MaGHMP kinase3 (8.5 fold) was noted during cold stress, while MaGHMP kinase1 (25 fold and 40.01 fold) showed maximum expression during drought and salt stress conditions in leaf tissue of Rasthali.

Conclusion: Our findings suggested that MaGHMP kinase1 (MaHSK) and MaGHMP kinase3 (MaGlcAK) could be considered promising candidates for thwarting the abiotic stresses in banana.

Keywords: Abiotic stress; Banana; Climate change; Drought stress; GHMP kinase; Gene expression.

MeSH terms

  • Adenosine Triphosphate
  • Cold-Shock Response
  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Plant / genetics
  • Genome, Plant / genetics
  • Musa* / genetics
  • Musa* / metabolism
  • Phylogeny
  • Plant Proteins / metabolism
  • Stress, Physiological / genetics

Substances

  • Adenosine Triphosphate
  • Plant Proteins