Identification of a novel five ferroptosis-related gene signature as a promising prognostic model for breast cancer

J Cancer Res Clin Oncol. 2023 Dec;149(18):16779-16795. doi: 10.1007/s00432-023-05423-5. Epub 2023 Sep 20.

Abstract

Background: Breast cancer (BCa) is a major challenge for women's health worldwide. Ferroptosis is closely related to tumorigenesis and cancer progression. However, the prognostic value of ferroptosis-related genes in BCa remains unclear, and more accurate prognostic models are urgently needed.

Methods: Gene expression profiles and clinical information of BCa patients were collected from public databases. LASSO and multivariate Cox regression analysis were utilized to construct the prognostic gene signature. Kaplan-Meier plotter, receiver operating characteristic (ROC) curves, and nomogram were used to validate the prognostic value of the gene signature. Gene set enrichment analysis was performed to explore the molecular functions and signaling pathways.

Results: Differentially expressed ferroptosis-related genes between BCa samples and normal tissues were obtained. A novel five-gene signature including BCL2, SLC40A1, TFF1, APOOL, and PRAME was established for prognosis prediction. Patients stratified into high-risk or low-risk group displayed significantly different survival. Kaplan-Meier and ROC curves showed a good performance for survival prediction in different cohorts. Biological function analysis revealed that the five-gene signature was associated with cancer progression, immune infiltration, immune response, and drug resistance. Nomogram including the five-gene signature was established.

Conclusion: A novel five ferroptosis-related gene signature and nomogram could be used for prognostic prediction in BCa.

Keywords: Breast cancer; Ferroptosis; Gene signature; Overall survival; Prognosis.

MeSH terms

  • Antigens, Neoplasm
  • Breast Neoplasms* / genetics
  • Carcinogenesis
  • Female
  • Ferroptosis* / genetics
  • Humans
  • Nomograms
  • Prognosis

Substances

  • PRAME protein, human
  • Antigens, Neoplasm