In silico analysis and verification of critical genes related to vascular calcification in multiple diseases

Cell Biochem Funct. 2023 Dec;41(8):1242-1251. doi: 10.1002/cbf.3858. Epub 2023 Sep 14.

Abstract

Identifying a functional molecular therapeutic target of vascular calcification (VC) that will not affect normal osteogenic differentiation is a challenge. To address this aim, we screened the differentially expressed genes (DEGs) in different VC conditions, including endothelial-osteogenic transition (EOT) (GSE167962), chronic kidney disease (CKD), and atherosclerosis (AS) (GSE159832). KEGG pathways, protein-protein interactions, and hub genes were also analyzed. The intersecting DEGs among the EOT, CKD, and AS groups were verified by quantitative reverse transcription polymerase chain reaction and immunohistochemistry in a DOCA-salt hypertension mouse model. The phosphoinositide 3-kinase-protein kinase B signaling pathway, ECM-receptor interaction, chemokine signaling pathway, and focal adhesion were enriched in EOT and AS-induced VC. ECM-receptor interaction, PPAR signaling pathway, apelin signaling pathway, AMPK signaling pathway, adipocytokine signaling pathway, and cholesterol metabolism were enriched in CKD and AS-induced VC. C4b, Cebpa, Lyz2, and Spp1 were also upregulated in EOT, CKD, AS, and hypertension. This study identified promising molecular targets for VC therapy.

Keywords: atherosclerosis; chronic kidney disease; endothelial-osteogenic transition; hypertension; vascular calcification.

MeSH terms

  • Animals
  • Hypertension* / genetics
  • Mice
  • Osteogenesis
  • Phosphatidylinositol 3-Kinases
  • Renal Insufficiency, Chronic* / genetics
  • Vascular Calcification* / genetics
  • Vascular Calcification* / metabolism

Substances

  • Phosphatidylinositol 3-Kinases