Klebsiella pneumoniae co-harbouring bla NDM-1 , armA and mcr-10 isolated from blood samples in Myanmar

J Med Microbiol. 2023 Sep;72(9). doi: 10.1099/jmm.0.001750.

Abstract

Background. The spread of Enterobacteriaceae coproducing carbapenemases, 16S rRNA methylase and mobile colistin resistance proteins (MCRs) has become a serious public health problem worldwide. This study describes two clinical isolates of Klebsiella pneumoniae coharbouring bla IMP-1, armA and mcr-10.Methods. Two clinical isolates of K. pneumoniae resistant to carbapenems and aminoglycosides were obtained from two patients at a hospital in Myanmar. Their minimum inhibitory concentrations (MICs) were determined by broth microdilution methods. The whole-genome sequences were determined by MiSeq and MinION methods. Drug-resistant factors and their genomic environments were determined.Results. The two K. pneumoniae isolates showed MICs of ≥4 and ≥1024 µg ml-1 for carbapenems and aminoglycosides, respectively. Two K. pneumonaie harbouring mcr-10 were susceptible to colistin, with MICs of ≤0.015 µg ml-1 using cation-adjusted Mueller-Hinton broth, but those for colistin were significantly higher (0.5 and 4 µg ml-1) using brain heart infusion medium. Whole-genome analysis revealed that these isolates coharboured bla NDM-1, armA and mcr-10. These two isolates showed low MICs of 0.25 µg ml-1 for colistin. Genome analysis revealed that both bla NDM-1 and armA were located on IncFIIs plasmids of similar size (81 kb). The mcr-10 was located on IncM2 plasmids of sizes 220 or 313 kb in each isolate. These two isolates did not possess a qseBC gene encoding a two-component system, which is thought to regulate the expression of mcr genes.Conclusion. This is the first report of isolates of K. pneumoniae coharbouring bla NDM-1, armA and mcr-10 obtained in Myanmar.

Keywords: 16S rRNA methylase; Klebsiella pneumoniae; armA; blaNDM-1; carbapenem resistance; carbapenemase; colistin resistance; mcr-10; phosphoethanolamine transferase.

MeSH terms

  • Aminoglycosides
  • Anti-Bacterial Agents / pharmacology
  • Carbapenems
  • Colistin* / pharmacology
  • Humans
  • Klebsiella pneumoniae* / genetics
  • Myanmar
  • RNA, Ribosomal, 16S

Substances

  • Colistin
  • beta-lactamase NDM-1
  • RNA, Ribosomal, 16S
  • Anti-Bacterial Agents
  • Aminoglycosides
  • Carbapenems