Structure-guided approach to modify the substrate specificity of the protein human deglycase-1 (hDJ-1)

Biochem Biophys Res Commun. 2023 Oct 30:679:122-128. doi: 10.1016/j.bbrc.2023.08.058. Epub 2023 Sep 1.

Abstract

Glycation is a non-enzymatic reaction wherein sugars or dicarbonyls such as methylglyoxal (MGO) and glyoxal (GO) react with proteins, leading to protein inactivation. The hydrolysing enzyme human deglycase-1 (hDJ-1) is reported to decrease glycative stress by deglycating the modified proteins, specifically at cysteine, lysine, and arginine sites. This specificity of hDJ-1 is thought to be regulated by its active site cysteine residue (Cys106). Structural analysis of hDJ-1 by molecular docking and simulation studies, however, indicates a possible role of glutamate (Glu18) in determining its substrate specificity. To elucidate this, Glu18 present at the catalytic site of hDJ-1 was modified to aspartate (Asp18) by SDM, and the resultant mutant was termed mutant DJ-1 (mDJ-1). Both hDJ-1 and mDJ-1 were heterologously expressed in Escherichia coli BL21 (DE3) strain and purified to homogeneity. The hDJ-1 showed kcat values of 1.45 × 103 s-1, 3.6 × 102 s-1, and 3.1 × 102 s-1, and Km values 0.181 mM, 18.18 mM, and 12.5 mM for N-acetylcysteine (NacCys), N-acetyllysine (NacLys), and N-acetylarginine (NacArg), respectively. The mDJ-1 showed altered kcat values (8 × 102 s-1, 3.8 × 102 s-1, 4.9 × 102 s-1) and Km values of 0.14 mM, 6.25 mM, 5.88 mM for NacCys, NacLys and NacArg, respectively. A single amino acid change (Glu18 to Asp18) improved the substrate specificity of mDJ-1 toward NacLys and NacArg. Understanding hDJ-1's structure and enhanced functionality will facilitate further exploration of its therapeutic potential for the treatment of glycation-induced diabetic complications.

Keywords: Enzyme kinetics; Glycation; Human deglycase-1; Molecular docking; Site-directed mutagenesis; Substrate specificity.

MeSH terms

  • Acetylcysteine / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Glyoxal* / metabolism
  • Humans
  • Kinetics
  • Molecular Docking Simulation
  • Pyruvaldehyde* / metabolism
  • Substrate Specificity

Substances

  • Glyoxal
  • Pyruvaldehyde
  • Acetylcysteine