Multi-omics in HIV: searching insights to understand immunological non-response in PLHIV

Front Immunol. 2023 Aug 15:14:1228795. doi: 10.3389/fimmu.2023.1228795. eCollection 2023.

Abstract

Antiretroviral therapy (ART) induces persistent suppression of HIV-1 replication and gradual recovery of T-cell counts, and consequently, morbidity and mortality from HIV-related illnesses have been significantly reduced. However, in approximately 30% of people living with HIV (PLHIV) on ART, CD4+ T-cell counts fail to normalize despite ART and complete suppression of HIV viral load, resulting in severe immune dysfunction, which may represent an increased risk of clinical progression to AIDS and non-AIDS events as well as increased mortality. These patients are referred to as "immune inadequate responders", "immunodiscordant responders" or "immune nonresponders (INR)". The molecular mechanisms underlying poor CD4+ T-cell recovery are still unclear. In this sense, the use of omics sciences has shed light on possible factors involved in the activity and metabolic dysregulation of immune cells during the failure of CD4+ T-cell recovery in INR. Moreover, identification of key molecules by omics approaches allows for the proposal of potential biomarkers or therapeutic targets to improve CD4+ T-cell recovery and the quality of life of these patients. Hence, this review aimed to summarize the information obtained through different omics concerning the molecular factors and pathways associated with the INR phenotype to better understand the complexity of this immunological status in HIV infection.

Keywords: PLHIV; genomics; immunological non-response; metabolomics; proteomics; transcriptomics.

Publication types

  • Review
  • Research Support, Non-U.S. Gov't

MeSH terms

  • HIV Infections* / drug therapy
  • HIV Seropositivity*
  • HIV Testing
  • Humans
  • Multiomics
  • Quality of Life

Grants and funding

This research was funded by the Fondo de Investigacion Sanitaria [PI19/01337 and PI20/00326]-ISCIII-FEDER (co-funded by the European Regional Development Fund/European Social Fund; “A way to make Europe”/”Investing in your future”); the Programa de Suport als Grups de Recerca AGAUR (2021SGR01404) and the CIBER -Consorcio Centro de Investigación Biomédica en Red- (CB21/13/00020, CB21/13/00063, CB21/13/00086, CB21/13/00094), Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación and Unión Europea – NextGenerationEU. FV is supported by grants from the Programa de Intensificacioín de Investigadores (INT20/00031)-ISCIII and by “Premi a la Trajectòria Investigadora dels Hospitals de l’ICS 2018”. AR is supported by a grant from IISPV through the project “2019/IISPV/05” (Boosting Young Talent), by GeSIDA through the “III Premio para Joívenes Investigadores 2019” and by the Instituto de Salud Carlos III (ISCIII) under grant agreement “CP19/00146” through the Miguel Servet Program. SE is supported by the Instituto de Salud Carlos III (ISCIII) under grant agreement “FI21/00210” through the programme “Contratos Predoctorales de Formación en Investigación en Salud”.