Comparative microbiome analysis reveals the variation in microbial communities between 'Kyoho' grape and its bud mutant variety

PLoS One. 2023 Aug 30;18(8):e0290853. doi: 10.1371/journal.pone.0290853. eCollection 2023.

Abstract

Microbes are an important part of the vineyard ecosystem, which significantly influence the quality of grapes. Previously, we identified a bud mutant variety (named 'Fengzao') from 'Kyoho' grapes. The variation of microbial communities in grape and its bud mutant variety has not been studied yet. So, in this study, with the samples of both 'Fengzao' and 'Kyoho', we conducted high-throughput microbiome sequencing and investigated their microbial communities in different tissues. Obvious differences were observed in the microbial communities between 'Fengzao' and 'Kyoho'. The fruit and the stem are the tissues with relatively higher abundance of microbes, while the leaves contained less microbes. The fruit and the stem of 'Kyoho' and the stem of 'Fengzao' had relatively higher species diversity based on the alpha diversity analysis. Proteobacteria, Enterobacteriaceae and Rhodobacteraceae had significantly high abundance in 'Fengzao'. Firmicutes and Pseudomonas were highly abundant in the stems of 'Kyoho', and family of Spirochaetaceae, Anaplasmataceae, Chlorobiaceae, and Sphingomonadaceae, and genera of Spirochaeta, Sphingomonas, Chlorobaculum and Wolbachia were abundant in the fruits of 'Kyoho'. These identified microbes are main components of the microbial communities, and could be important regulators of grapevine growth and development. This study revealed the differences in the microbial compositions between 'Kyoho' and its bud mutant, and these identified microbes will be significant resources for the future researches on the quality regulation and disease control of grapevines.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anaplasmataceae*
  • Chlorobi*
  • Enterobacteriaceae
  • Microbiota* / genetics
  • Vitis*

Grants and funding

This work was financially supported by National Natural Science Foundation of China (32202409 to T.L.W.), Program for Innovative Research Team (in Science and Technology) in University of Henan Province (21IRTSTHN021 to D.L.G.), Natural Science Foundation of Henan Province (232300421112 to D.L.G.), Key Scientific Research Project of Universities in Henan Province (23A210013 to T.L.W.), and North Jiangsu Provence of Science and Technology Project (XZ-SZ202147 to Y.H.Y.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.