Proteogenomic identification of an immunogenic antigen derived from human endogenous retrovirus in renal cell carcinoma

JCI Insight. 2023 Aug 22;8(16):e167712. doi: 10.1172/jci.insight.167712.

Abstract

CD8+ T cells can recognize tumor antigens displayed by HLA class I molecules and eliminate tumor cells. Despite their low tumor mutation burden, immune checkpoint blockade (ICB) is often beneficial in patients with renal cell carcinoma (RCC). Here, using a proteogenomic approach, we directly and comprehensively explored the HLA class I-presenting peptidome of RCC tissues and demonstrated that the immunopeptidomes contain a small subset of peptides derived from human endogenous retroviruses (hERV). A comparison between tumor and normal kidney tissues revealed tumor-associated hERV antigens, one of which was immunogenic and recognized by host tumor-infiltrating lymphocytes (TIL). Stimulation with the hERV antigen induced reactive CD8+ T cells in healthy donor-derived (HD-derived) peripheral blood mononuclear cells (PBMC). These results highlight the presence of antitumor CD8+ T cell surveillance against hERV3895 antigens, suggesting their clinical applications in patients with RCC.

Keywords: Antigen presentation; Cancer immunotherapy; Immunology; Oncology; T cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carcinoma, Renal Cell* / genetics
  • Endogenous Retroviruses* / genetics
  • Humans
  • Kidney Neoplasms* / genetics
  • Lymphocytes, Tumor-Infiltrating
  • Proteogenomics*