Structure-Activity Relationships of the Antimicrobial Peptide Natural Product Apidaecin

J Med Chem. 2023 Sep 14;66(17):11831-11842. doi: 10.1021/acs.jmedchem.3c00406. Epub 2023 Aug 21.

Abstract

With the growing crisis of antimicrobial resistance, it is critical to continue to seek out new sources of novel antibiotics. This need has led to renewed interest in natural product antimicrobials, specifically antimicrobial peptides. Nonlytic antimicrobial peptides are highly promising due to their unique mechanisms of action. One such peptide is apidaecin (Api), which inhibits translation termination through stabilization of the quaternary complex of the ribosome-apidaecin-tRNA-release factor. Synthetic derivatives of apidaecin have been developed, but structure-guided modifications have yet to be considered. In this work, we have focused on modifying key residues in the Api sequence that are responsible for the interactions that stabilize the quaternary complex. We present one of the first examples of a highly modified Api peptide that maintains its antimicrobial activity and interaction with the translation complex. These findings establish a starting point for further structure-guided optimization of Api peptides.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Antimicrobial Cationic Peptides / pharmacology
  • Antimicrobial Peptides*
  • Biological Products* / pharmacology
  • Structure-Activity Relationship

Substances

  • apidaecin
  • Antimicrobial Peptides
  • Antimicrobial Cationic Peptides
  • Biological Products